8387 DUF1900
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
8387 chr_10 DUF1900 464225 465840 + DUF1900

Synonyms

NCBI ID Ensembl Genomes exon ID
7451096 Thaps8387.2, Thaps8387.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0087

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0176
 0.34

Most Highly Correlated Transcripts

32706

VRG4
0.9246

35420

ALDH-SF superfamily
0.9

261140

UDP-galactose:N-acetylgalactosamine-alpha-R beta 1,3-galactosyltransferase
0.8944

3158

HepA
0.8919

7942

hypothetical protein
0.8886

6816

GST_C_family superfamily
0.8847

5775

PKc_like superfamily
0.8825

22301

(PMM1) PLN02423
0.8802

262526

MCM
0.8792

263366

Pkinase
0.8762

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
DUF1900 superfamily Domain of unknown function (DUF1900); This domain is predominantly found in the structural protein... - 200.844 1.96E-62 265 - 401 superfamily 255124
DUF1900 superfamily Domain of unknown function (DUF1900); This domain is predominantly found in the structural protein... - 200.844 1.96E-62 265 - 401 superfamily 255124
WD40 superfamily WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions... - 94.7092 3.58E-22 74 - 300 superfamily 238121
DUF1899 superfamily Domain of unknown function (DUF1899); This set of domains is found in various eukaryotic proteins.... - 63.412 8.08E-13 4 - 54 superfamily 149883

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_45580 PHATRDRAFT_45580 165730 70315 Not available Not available Not available 285516

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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