9289 Tryp_SPcThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
9289	chr_13	Tryp_SPc	28697	30390	+	Tryp_SPc

Synonyms

NCBI ID	Ensembl Genomes exon ID
7450544	Thaps9289.5, Thaps9289.3, Thaps9289.4, Thaps9289.2, Thaps9289.1, Thaps9289.6

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0386

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0031	0.36	0.00007 15000

Most Highly Correlated Transcripts

bd1857 (bd1857) DnaJ 0.87	bd1852 (bd1852) NA 0.8159	bd1659 (bd1659) ZnMc_pappalysin_like 0.815	bd1809 (bd1809) ZnMc_pappalysin_like 0.8014	bd765 (bd765) NA 0.795	bd463 (bd463) Aa_trans superfamily 0.7849
bd758 (bd758) NA 0.7806	bd790 (bd790) ABCC_MRP_domain2 0.78	bd951 (bd951) NA 0.7732	bd843 (bd843) NA 0.7669

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Tryp_SPc superfamily		Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are...	-	184.787	3.73E-55	104 - 331	superfamily	238113
Tryp_SPc superfamily		Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are...	-	184.787	3.73E-55	104 - 331	superfamily	238113
Tryp_SPc		Trypsin-like serine protease; Many of these are synthesised as inactive precursor zymogens that are...	-	179.411	3.12E-53	104 - 328	multi-dom	214473

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0004295 GO:0006508 GO:0004263 GO:0030019 -

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