9746 RNA_pol_Rpb4
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
9746 chr_14 RNA_pol_Rpb4 256595 257336 + RNA_pol_Rpb4

Synonyms

NCBI ID Ensembl Genomes exon ID
7451200 Thaps9746.2, Thaps9746.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0420

Most Highly Correlated Transcripts

19826

LSm1
0.9174

30701

PRK05279
0.9149

4535

hypothetical protein
0.9147

36641

Aldolase_Class_I superfamily
0.9115

11848

hypothetical protein
0.9094

3348

hypothetical protein
0.9069

21811

UBCc
0.903

23819

hypothetical protein
0.8992

6727

Isy1
0.8968

9115

DnaJ
0.8953

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RNA_pol_Rpb4 RNA polymerase Rpb4; This family includes the Rpb4 protein. This family also includes C17 (aka CGRP... cl00638 56.0455 4.87E-11 41 - 162 specific 252220
RNA_pol_Rpb4 superfamily RNA polymerase Rpb4; This family includes the Rpb4 protein. This family also includes C17 (aka CGRP... - 56.0455 4.87E-11 41 - 162 superfamily 260546

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATR_46699 PHATR_46699 272598 201696 Not available Not available Not available 552395

KEGG

KEGG description KEGG Pathway
RNA polymerase map03020

GO Terms

GO:0003899 GO:0003900 GO:0003901 GO:0003902 -

GO:0003899

DNA-directed RNA polymerase activity

Details: 
Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
GO Category: 
MF

GO:0003900

NA

Details: 
NA
GO Category: 
NA

GO:0003901

NA

Details: 
NA
GO Category: 
NA

GO:0003902

NA

Details: 
NA
GO Category: 
NA

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