bd2050 (bd2050) rpoC2
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
bd2050 bd_26x41 (bd2050) rpoC2 32550 36890 + rpoC2

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0064

Most Highly Correlated Transcripts

ThpsCp032

(rpoC2) RNA polymerase beta'' subunit
1

5545

hypothetical protein
0.9368

260942

YjgF_YER057c_UK114_like_1
0.918

24876

hypothetical protein
0.9032

35200

FKBP_C
0.9018

17443

IMPase
0.901

bd208

(bd208) DUF3529
0.9007

9787

hypothetical protein
0.9005

270321

hypothetical protein
0.8982

31851

BKR_SDR_c
0.8982

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RNAP_beta'_C Largest subunit (beta') of Bacterial DNA-dependent RNA polymerase (RNAP), C-terminal... cl11429 245.515 8.93E-74 1179 - 1420 specific 132721
RNAP_largest_subunit_C superfamily Largest subunit of RNA polymerase (RNAP), C-terminal domain; RNA polymerase (RNAP) is a large multi... - 87.583 5.67E-19 304 - 360 superfamily 142634
RNAP_largest_subunit_N superfamily Largest subunit of RNA polymerase (RNAP), N-terminal domain; This region represents the N-terminal... - 305.212 2.45E-89 6 - 216 superfamily 267467
RNAP_largest_subunit_C superfamily Largest subunit of RNA polymerase (RNAP), C-terminal domain; RNA polymerase (RNAP) is a large multi... - 87.583 5.67E-19 304 - 360 superfamily 142634
rpoC2 RNA polymerase beta'' subunit; Reviewed - 1274.49 0 1 - 1446 multi-dom 214368

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available 210816 Not available Not available ATCG00170.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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