1684 Ion_trans_2
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
1684 chr_1 Ion_trans_2 2159411 2161334 + Ion_trans_2

Synonyms

NCBI ID Ensembl Genomes exon ID
7449151 Thaps1684.2, Thaps1684.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0153

Most Highly Correlated Transcripts

30701

PRK05279
0.9429

261567

TPR
0.9372

39726

NrfG
0.9327

4267

COG0790
0.9284

3570

PP2Cc
0.9284

262821

AAA
0.924

3348

hypothetical protein
0.9221

11563

hypothetical protein
0.9198

263361

CHD
0.9195

2154

hypothetical protein
0.9171

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Ion_trans_2 superfamily Ion channel; This family includes the two membrane helix type ion channels found in bacteria. - 67.6653 7.68E-14 422 - 485 superfamily 254488
Ion_trans_2 superfamily Ion channel; This family includes the two membrane helix type ion channels found in bacteria. - 67.6653 7.68E-14 422 - 485 superfamily 254488
Ion_trans_2 superfamily Ion channel; This family includes the two membrane helix type ion channels found in bacteria. - 67.6653 7.68E-14 422 - 485 superfamily 254488
Ion_trans_2 superfamily Ion channel; This family includes the two membrane helix type ion channels found in bacteria. - 67.6653 7.68E-14 422 - 485 superfamily 254488

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_43171 PHATRDRAFT_43171 Not available Not available 197156 Not available AT4G18160.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005267 GO:0006813 GO:0016020 GO:0005509 -

GO:0005267

potassium channel activity

Details: 
Catalysis of facilitated diffusion of a potassium ion (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism.
GO Category: 
MF

GO:0006813

potassium ion transport

Details: 
The directed movement of potassium ions (K+) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO Category: 
BP

GO:0016020

membrane

Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO Category: 
CC

GO:0005509

calcium ion binding

Details: 
Interacting selectively and non-covalently with calcium ions (Ca2+).
GO Category: 
MF

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