17242 SPFH_like_u4
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
17242 chr_6 SPFH_like_u4 543493 544803 - SPFH_like_u4

Synonyms

NCBI ID Ensembl Genomes exon ID
7451179 Thaps17242.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0108

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0103
 0.42

Most Highly Correlated Transcripts

bd1839

(bd1839) NA
0.9364

bd415

(bd415) arom_aa_hydroxylase superfamily
0.9315

bd1756

(bd1756) NA
0.9219

bd1841

(bd1841) CAP10 superfamily
0.9079

bd1934

(bd1934) NA
0.8972

22430

SOUL
0.8933

bd410

(bd410) HNHc
0.8918

23771

hypothetical protein
0.89

6396

Dabb
0.8842

6668

hypothetical protein
0.8824

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
SPFH_like_u4 Uncharacterized family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily; This model... cl19107 301.811 8.30E-100 130 - 375 specific 259805
SPFH_like superfamily core domain of the SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily; This model... - 301.811 8.30E-100 130 - 375 superfamily 267460
PHB prohibitin homologues; prohibitin homologues - 82.3232 1.13E-18 126 - 285 multi-dom 214581

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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