1779 SPXThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
1779	chr_1	SPX	2407205	2410099	+	SPX

Synonyms

NCBI ID	Ensembl Genomes exon ID
7449055	Thaps1779.1, Thaps1779.5, Thaps1779.3, Thaps1779.4, Thaps1779.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0422

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0138	0.36	190 14000

Most Highly Correlated Transcripts

bd415 (bd415) arom_aa_hydroxylase superfamily 0.8967	bd1841 (bd1841) CAP10 superfamily 0.8862	5371 hypothetical protein 0.8685	4000 hypothetical protein 0.8639	262408 6PGL 0.8583	bd885 (bd885) NA 0.8531
bd410 (bd410) HNHc 0.8449	bd884 (bd884) NA 0.8381	263251 PKc_like superfamily 0.8367	23295 Trp_Tyr_perm superfamily 0.8351

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
SPX superfamily		SPX domain; We have named this region the SPX domain after (SYG1, Pho81 and XPR1). This 180 residue...	-	77.4709	3.51E-16	136 - 272	superfamily	251734
SPX superfamily		SPX domain; We have named this region the SPX domain after (SYG1, Pho81 and XPR1). This 180 residue...	-	77.4709	3.51E-16	136 - 272	superfamily	251734

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_47434	PHATRDRAFT_47434	259654	175264	Not available	Not available	Not available	248423

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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