PHATRDRAFT_83 abc transporter (ABCG_PDR_domain2)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_83 chr_1 abc transporter (ABCG_PDR_domain2) 399327 403119 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0406

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0148
 0.35

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ABCG_PDR_domain2 Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette... cl17201 276.432 1.08E-85 616 - 847 specific 213199
ABC_ATPase superfamily ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... - 140.861 2.31E-37 1 - 212 superfamily 266551
ABC_ATPase superfamily ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... - 140.861 2.31E-37 1 - 212 superfamily 266551
ABC2_membrane ABC-2 type transporter; ABC-2 type transporter. cl17235 112.736 1.46E-27 310 - 518 specific 250332
ABC2_membrane superfamily ABC-2 type transporter; ABC-2 type transporter. - 112.736 1.46E-27 310 - 518 superfamily 266576
ABC2_membrane ABC-2 type transporter; ABC-2 type transporter. cl17235 112.736 1.46E-27 310 - 518 specific 250332
ABC2_membrane superfamily ABC-2 type transporter; ABC-2 type transporter. - 112.736 1.46E-27 310 - 518 superfamily 266576
SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] - 111.062 5.88E-27 631 - 841 multi-dom 224059
anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit; This protein family is the ATP-binding... - 61.4052 1.19E-10 1 - 254 multi-dom 163483
ABC2_membrane_3 ABC-2 family transporter protein; This family is related to the ABC-2 membrane transporter family... - 40.0235 0.00194022 1047 - 1164 multi-dom 257232

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
264773 Not available 156127 242415 430087 Cre04.g224500.t1.1 AT4G15215.1 250541

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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