PHATRDRAFT_42799 (RINGv)Phaeodactylum tricornutum | Diatom Portal

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_42799	chr_1	(RINGv)	1161122	1165356	+

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0407

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
RINGv		The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral...	cl17394	79.2602	1.26E-17	132 - 180	specific	128983
RINGv superfamily		RING-variant domain; RING-variant domain.	-	79.2602	1.26E-17	132 - 180	superfamily	266663

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
22477		Not available	259825	145496	Not available	Not available	AT4G34100.1	358938

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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