PHATRDRAFT_42809 tpr repeat:nb-arc:peptidasecaspase catalytic subunit p20:tetratricopeptide tpr_3:tetratricopeptide tpr_4:tetratricopeptide tpr_4 (TPR_12)
Phaeodactylum tricornutum

   

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_42809	chr_1	tpr repeat:nb-arc:peptidasecaspase catalytic subunit p20:tetratricopeptide tpr_3:tetratricopeptide...	1197042	1198013	+

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0015

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0111	0.46	1.8 200000

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
TPR superfamily		Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF...	-	63.9384	5.47E-13	143 - 250	superfamily	238112
TPR superfamily		Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF...	-	63.9384	5.47E-13	143 - 250	superfamily	238112
TPR_12		Tetratricopeptide repeat; Tetratricopeptide repeat.	-	63.9354	3.19E-13	179 - 254	multi-dom	257749
TPR_12		Tetratricopeptide repeat; Tetratricopeptide repeat.	-	63.9354	3.19E-13	179 - 254	multi-dom	257749
TPR_11		TPR repeat; TPR repeat.	-	39.9895	7.77E-05	143 - 212	multi-dom	257739

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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