PHATRDRAFT_24739 (gltB)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_24739 chr_1 (gltB) 1354555 1359591 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0142

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0152
 0.19

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
GltS Glutamine amidotransferases class-II (Gn-AT), glutamate synthase (GltS)-type. GltS is a homodimer... cl00319 582.562 0 15 - 456 specific 238365
Gn_AT_II superfamily Glutamine amidotransferases class-II (GATase). The glutaminase domain catalyzes an amide nitrogen... - 582.562 0 15 - 456 superfamily 260351
GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that... cl17186 481.27 1.69E-155 883 - 1249 specific 239202
TIM_phosphate_binding superfamily TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an... - 481.27 1.69E-155 883 - 1249 superfamily 266538
gltB_C gltb_C. This domain is found at the C-terminus of the large subunit (gltB) of glutamate synthase (... cl00239 399.594 9.43E-128 1295 - 1546 specific 238482
GXGXG superfamily GXGXG domain. This domain of unknown function is found at the C-terminus of the large subunit (gltB... - 399.594 9.43E-128 1295 - 1546 superfamily 260291
Glu_syn_central superfamily Glutamate synthase central domain; The central domain of glutamate synthase connects the amino... - 417.719 1.04E-133 489 - 788 superfamily 252865
Glu_syn_central superfamily Glutamate synthase central domain; The central domain of glutamate synthase connects the amino... - 417.719 1.04E-133 489 - 788 superfamily 252865
gltB glutamate synthase subunit alpha; Provisional - 1681.58 0 11 - 1545 multi-dom 236968

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available 225692 Not available AT2G41220.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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