PHATRDRAFT_42980 phytoene dehydrogenase and related protein (COG1233)
Phaeodactylum tricornutum

   

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_42980	chr_1	phytoene dehydrogenase and related protein (COG1233)	1684628	1687480	+

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0102

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0113	0.23	310 540

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
NAD_binding_8		NAD(P)-binding Rossmann-like domain; NAD(P)-binding Rossmann-like domain.	cl19134	43.6387	1.98E-05	293 - 344	specific	257775
NAD_binding_8 superfamily		NAD(P)-binding Rossmann-like domain; NAD(P)-binding Rossmann-like domain.	-	43.6387	1.98E-05	293 - 344	superfamily	267487
COG1233		Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and...	-	68.23	3.79E-12	287 - 568	multi-dom	224154

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
25361		Not available	229819	182967	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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