PHATRDRAFT_9143 rna-binding protein puf1 (Pumilio superfamily)
Phaeodactylum tricornutum

   

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_9143	chr_1	rna-binding protein puf1 (Pumilio superfamily)	1731671	1732582	+

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0203

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0175	0.30	490 6900

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Pumilio superfamily		Pumilio-family RNA binding domain; Puf repeats (also labelled PUM-HD or Pumilio homology domain)...	-	274.854	2.05E-90	1 - 304	superfamily	153420

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
31938		Not available	269082	194376	416268	Cre12.g544700.t1.1	AT1G22240.1	545979

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

Add comment

Log in to post comments