PHATRDRAFT_24978 h+lysosomal (vacuolar proton pump)beta 56 58isoform 2 (V-ATPase_V1_B)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_24978 chr_1 h+lysosomal (vacuolar proton pump)beta 56 58isoform 2 (V-ATPase_V1_B) 2110136 2112025 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0191

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0057
 0.32

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build... cl17233 573.456 0 104 - 386 specific 238555
RecA-like_NTPases superfamily RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and... - 573.456 0 104 - 386 superfamily 266574
ATP-synt_ab_C superfamily ATP synthase alpha/beta chain, C terminal domain; ATP synthase alpha/beta chain, C terminal domain. - 79.6238 6.30E-18 403 - 488 superfamily 249758
ATP-synt_ab_C superfamily ATP synthase alpha/beta chain, C terminal domain; ATP synthase alpha/beta chain, C terminal domain. - 79.6238 6.30E-18 403 - 488 superfamily 249758
ATP-synt_ab_N superfamily ATP synthase alpha/beta family, beta-barrel domain; This family includes the ATP synthase alpha and... - 52.1433 1.00E-08 36 - 102 superfamily 251583
ATP-synt_ab_N superfamily ATP synthase alpha/beta family, beta-barrel domain; This family includes the ATP synthase alpha and... - 52.1433 1.00E-08 36 - 102 superfamily 251583
V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit; This models eukaryotic vacuolar (H+)-ATPase that is responsible... - 933.753 0 32 - 493 multi-dom 233244

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
40522 Not available 203765 44144 442547 Cre02.g076350.t1.2 AT1G76030.1 502439

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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