PHATRDRAFT_27923 vacuolar type atpase subunit a (V-ATPase_V1_A)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_27923 chr_10 vacuolar type atpase subunit a (V-ATPase_V1_A) 301436 303395 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0113

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0225
 0.20

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a... cl17233 709.376 0 79 - 463 specific 238554
RecA-like_NTPases superfamily RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and... - 709.376 0 79 - 463 superfamily 266574
ATP-synt_ab_C superfamily ATP synthase alpha/beta chain, C terminal domain; ATP synthase alpha/beta chain, C terminal domain. - 78.4682 2.56E-17 481 - 585 superfamily 249758
ATP-synt_ab_C superfamily ATP synthase alpha/beta chain, C terminal domain; ATP synthase alpha/beta chain, C terminal domain. - 78.4682 2.56E-17 481 - 585 superfamily 249758
ATP-synt_ab_N superfamily ATP synthase alpha/beta family, beta-barrel domain; This family includes the ATP synthase alpha and... - 61.0029 1.30E-11 15 - 75 superfamily 251583
ATP-synt_ab_N superfamily ATP synthase alpha/beta family, beta-barrel domain; This family includes the ATP synthase alpha and... - 61.0029 1.30E-11 15 - 75 superfamily 251583
V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit; This models eukaryotic vacuolar (H+)-ATPase that is responsible... - 986.164 0 11 - 613 multi-dom 233245

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
37123 Not available 272333 64770 439538 Cre10.g461050.t1.2 AT1G78900.2 300022

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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