PHATRDRAFT_20872 (CFTR_protein)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_20872 chr_10 (CFTR_protein) 628540 632721 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0489

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0062
 0.39

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ABCC_MRP_domain2 ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is... cl17201 349.1 7.67E-111 1067 - 1293 specific 213211
ABC_ATPase superfamily ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... - 320.57 7.69E-101 457 - 644 superfamily 266551
ABCC_MRP_domain1 ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This... cl17201 320.57 7.69E-101 457 - 644 specific 213217
ABC_ATPase superfamily ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... - 320.57 7.69E-101 457 - 644 superfamily 266551
ABC_membrane superfamily ABC transporter transmembrane region; This family represents a unit of six transmembrane helices.... - 105.453 1.56E-24 126 - 407 superfamily 250039
ABC_membrane superfamily ABC transporter transmembrane region; This family represents a unit of six transmembrane helices.... - 105.453 1.56E-24 126 - 407 superfamily 250039
ABC_membrane superfamily ABC transporter transmembrane region; This family represents a unit of six transmembrane helices.... - 105.453 1.56E-24 126 - 407 superfamily 250039
CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis... - 515.23 1.23E-157 14 - 1311 multi-dom 233335

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available AT3G60970.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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