PHATRDRAFT_46577 pseudouridylate synthase (PseudoU_synth_RluCD_like)
Phaeodactylum tricornutum

   

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_46577	chr_10	pseudouridylate synthase (PseudoU_synth_RluCD_like)	773791	775734	-

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0005

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0035	0.39	230 940

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
PseudoU_synth_RluCD_like		Pseudouridine synthase, RsuA/RluD family; This group is comprised of eukaryotic, bacterial and...	cl00130	104.727	9.41E-26	189 - 420	specific	211346
PseudoU_synth superfamily		Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to...	-	104.727	9.41E-26	189 - 420	superfamily	260207
Ocnus superfamily		Janus/Ocnus family (Ocnus); This family is comprised of the Ocnus, Janus-A and Janus-B proteins....	-	77.6704	5.34E-17	491 - 589	superfamily	252939

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
25486		Not available	232104	15935	Not available	Cre11.g474850.t1.1	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

Add comment

Log in to post comments