PHATRDRAFT_36570 serine-type d-ala-d-ala carboxypeptidase (AmpC)Phaeodactylum tricornutum | Diatom Portal

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_36570	chr_10	serine-type d-ala-d-ala carboxypeptidase (AmpC)	784031	785449	+

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0466

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
AmpC		Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	cl17358	128.574	4.16E-33	75 - 393	specific	224594
Beta-lactamase superfamily		Beta-lactamase; This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-...	-	128.574	4.16E-33	75 - 393	superfamily	266648

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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