PHATRDRAFT_36634 transcription elongation factor a2 (TFSII)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_36634 chr_10 transcription elongation factor a2 (TFSII) 934272 935243 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0303

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Zn-ribbon_TFIIS domain III/zinc ribbon domain of Transcription Factor IIS; TFIIS is a zinc-containing transcription... cl02609 88.4317 1.32E-22 283 - 323 specific 259796
Zn-ribbon superfamily C-terminal zinc ribbon domain of RNA polymerase intrinsic transcript cleavage subunit; The... - 88.4317 1.32E-22 283 - 323 superfamily 261369
TFIIS_I N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain... cl00146 56.5478 1.22E-10 10 - 80 specific 238107
TFIIS_I superfamily N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain... - 56.5478 1.22E-10 10 - 80 superfamily 260216
TFIIS_M Transcription factor S-II (TFIIS), central domain; Transcription elongation by RNA polymerase II is... cl02637 73.4276 2.19E-16 142 - 254 specific 254240
TFIIS_M superfamily Transcription factor S-II (TFIIS), central domain; Transcription elongation by RNA polymerase II is... - 73.4276 2.19E-16 142 - 254 superfamily 261385
TFSII transcription elongation factor S-II; This model represents eukaryotic transcription elongation... - 135.737 3.78E-37 7 - 322 multi-dom 233390

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
8433 Not available 241140 242814 Not available Cre09.g386350.t1.1 AT2G38560.1 482367

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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