PHATRDRAFT_46740 ccaat binding transcription factor cbf subunitpartial (HMGB-UBF_HMG-box)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_46740 chr_11 ccaat binding transcription factor cbf subunitpartial (HMGB-UBF_HMG-box) 336403 337541 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0349

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins.... cl00082 73.8161 6.21E-17 114 - 172 specific 238686
HMG-box superfamily High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and... - 73.8161 6.21E-17 114 - 172 superfamily 260179
H4 superfamily Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic... - 58.7764 1.89E-11 217 - 278 superfamily 260174

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
20688 Not available 207968 286854 Not available Not available Not available 309820

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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