PHATRDRAFT_13360 small nuclear ribonucleoprotein spliceosomal (RRM2_U1A_like)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_13360 chr_11 small nuclear ribonucleoprotein spliceosomal (RRM2_U1A_like) 480601 481281 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0144

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RRM2_U1A_like RNA recognition motif 2 in the U1A/U2B"/SNF protein family; This subfamily corresponds to... cl17169 111.892 1.48E-31 152 - 222 specific 240693
RRM_SF superfamily RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... - 110.696 4.94E-31 11 - 88 superfamily 266524
RRM1_U1A_like RNA recognition motif 1 in the U1A/U2B"/SNF protein family; This subfamily corresponds to... cl17169 110.696 4.94E-31 11 - 88 specific 240692
RRM_SF superfamily RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... - 110.696 4.94E-31 11 - 88 superfamily 266524
COG0724 RNA-binding proteins (RRM domain) [General function prediction only] - 49.175 2.06E-07 8 - 188 multi-dom 223796

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
1841 Not available 272588 260548 316755 Cre13.g566700.t1.1 AT2G30260.1 484798

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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