PHATRDRAFT_36844 tpr repeat
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_36844 chr_11 tpr repeat 492940 494088 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0082

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0186
 0.24

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
TPR superfamily Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF... - 38.5152 0.000393566 14 - 137 superfamily 238112
TPR superfamily Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF... - 38.5152 0.000393566 14 - 137 superfamily 238112
Methyltransf_24 Methyltransferase domain; This family appears to be a methyltransferase domain. cl17173 42.266 2.28E-05 223 - 338 specific 257894
AdoMet_MTases superfamily S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases... - 42.266 2.28E-05 223 - 338 superfamily 266528
TPR_11 TPR repeat; TPR repeat. - 44.9971 1.77E-06 66 - 136 multi-dom 257739

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
268526 Not available 179837 319928 367596 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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