PHATRDRAFT_21122 beta-tubulin (PLN00220)Phaeodactylum tricornutum | Diatom Portal

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_21122	chr_11	beta-tubulin (PLN00220)	566333	568033	+

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0196

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0229	0.31	0.000005 1600

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
beta_tubulin		The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and...	cl10017	865.82	0	2 - 426	specific	100016
Tubulin_FtsZ superfamily		Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well...	-	865.82	0	2 - 426	superfamily	263945
PLN00220		tubulin beta chain; Provisional	-	914.595	0	1 - 447	multi-dom	215107

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
8069		Not available	215685	198602	468958	Cre12.g549550.t1.2	AT5G23860.2	507388

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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