PHATRDRAFT_21548 (ABC_MTABC3_MDL1_MDL2)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_21548 chr_13 (ABC_MTABC3_MDL1_MDL2) 405716 410102 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0156

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0100
 0.43

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ABC_MTABC3_MDL1_MDL2 ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also... cl17201 389.591 3.08E-125 720 - 955 specific 213216
ABC_ATPase superfamily ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... - 389.591 3.08E-125 720 - 955 superfamily 266551
ABC_MTABC3_MDL1_MDL2 ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also... cl17201 389.591 3.08E-125 720 - 955 specific 213216
ABC_ATPase superfamily ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... - 389.591 3.08E-125 720 - 955 superfamily 266551
ABC_membrane superfamily ABC transporter transmembrane region; This family represents a unit of six transmembrane helices.... - 98.134 3.69E-22 1090 - 1320 superfamily 250039
ABC_membrane superfamily ABC transporter transmembrane region; This family represents a unit of six transmembrane helices.... - 98.134 3.69E-22 1090 - 1320 superfamily 250039
ABC_membrane superfamily ABC transporter transmembrane region; This family represents a unit of six transmembrane helices.... - 98.134 3.69E-22 1090 - 1320 superfamily 250039
MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] - 372.532 2.78E-114 46 - 674 multi-dom 224055
COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General... - 254.808 5.09E-73 437 - 958 multi-dom 224048

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available 471075 Not available Not available 252196

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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