PHATRDRAFT_47388 transcription elongation regulator foggy (SPT5)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_47388 chr_13 transcription elongation regulator foggy (SPT5) 495673 498942 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0170

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
NGN_Euk Eukaryotic N-Utilization Substance G (NusG) N-terminal (NGN) domain, including plant KTF1 (KOW... cl02766 124.565 3.56E-33 210 - 294 specific 193577
NGN superfamily N-Utilization Substance G (NusG) N-terminal (NGN) domain Superfamily; The N-Utilization Substance G... - 124.565 3.56E-33 210 - 294 superfamily 261435
KOW_Spt5_5 KOW domain of Spt5, repeat 5; Spt5, an eukaryotic ortholog of NusG, contains multiple KOW motifs at... cl00354 84.8437 1.00E-19 758 - 809 specific 240509
KOW superfamily KOW: an acronym for the authors' surnames (Kyrpides, Ouzounis and Woese); KOW domain is... - 50.2075 1.28E-07 999 - 1055 superfamily 260377
KOW_Spt5_3 KOW domain of Spt5, repeat 3; Spt5, an eukaryotic ortholog of NusG, contains multiple KOW motifs at... cl00354 66.7801 2.26E-13 535 - 591 specific 240507
KOW superfamily KOW: an acronym for the authors' surnames (Kyrpides, Ouzounis and Woese); KOW domain is... - 50.2075 1.28E-07 999 - 1055 superfamily 260377
KOW_Spt5_4 KOW domain of Spt5, repeat 4; Spt5, an eukaryotic ortholog of NusG, contains multiple KOW motifs at... cl00354 64.4633 1.19E-12 674 - 715 specific 240508
KOW superfamily KOW: an acronym for the authors' surnames (Kyrpides, Ouzounis and Woese); KOW domain is... - 50.2075 1.28E-07 999 - 1055 superfamily 260377
KOW_Spt5_1 KOW domain of Spt5, repeat 1; Spt5, an eukaryotic ortholog of NusG, contains multiple KOW motifs at... cl00354 62.8714 4.14E-12 305 - 342 specific 240505
KOW superfamily KOW: an acronym for the authors' surnames (Kyrpides, Ouzounis and Woese); KOW domain is... - 50.2075 1.28E-07 999 - 1055 superfamily 260377

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
2897 Not available 224310 283301 469967 Cre01.g031050.t1.2 AT4G08350.1 484339

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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