PHATRDRAFT_14067 trna-pseudouridine synthase (PseudoU_synth superfamily)Phaeodactylum tricornutum | Diatom Portal

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_14067	chr_13	trna-pseudouridine synthase (PseudoU_synth superfamily)	561002	562102	+

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0308

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0202	0.37	0.0005 6000

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
PseudoU_synth superfamily		Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to...	-	219.424	8.01E-71	75 - 271	superfamily	260207
S4		S4 RNA-binding domain; S4 RNA-binding domain.	cl09940	33.3354	0.00969054	31 - 75	specific	214638
S4 superfamily		S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged...	-	33.3354	0.00969054	31 - 75	superfamily	263930

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
36511		Not available	180172	218539	115056	Cre17.g702400.t1.2	AT5G51140.1	310955

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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