PHATRDRAFT_47412 (DEXDc)Phaeodactylum tricornutum | Diatom Portal

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_47412	chr_13	(DEXDc)	562626	566489	-

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0142

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0256	0.28	270 1600

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
DEXDc		DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA...	cl17251	68.1328	5.49E-13	363 - 510	specific	238005
DEXDc superfamily		DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA...	-	68.1328	5.49E-13	363 - 510	superfamily	266587
HELICc superfamily		Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast...	-	40.2989	0.000417092	846 - 904	superfamily	238034

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
20627		Not available	271319	184909	Not available	Not available	Not available	345391

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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