PHATRDRAFT_47518 exported protein (Alginate_lyase)
Phaeodactylum tricornutum

   

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_47518	chr_13	exported protein (Alginate_lyase)	869255	872116	+

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0028

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0046	0.37	0.0024 2700

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Alginate_lyase		Alginate lyase; This family contains several bacterial alginate lyase proteins. Alginate is a...	cl00179	117.537	8.20E-29	574 - 866	specific	253191
AlgLyase superfamily		Alginate Lyase A1-III; enzymatically depolymerizes alginate, a complex copolymer of beta-D-...	-	117.537	8.20E-29	574 - 866	superfamily	260237

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

Add comment

Log in to post comments