PHATRDRAFT_47619 (DEXDc)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_47619 chr_14 (DEXDc) 297191 302273 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0132

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0147
 0.26

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... cl17251 94.3264 8.99E-22 295 - 438 specific 238005
DEXDc superfamily DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... - 94.3264 8.99E-22 295 - 438 superfamily 266587
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 88.834 5.44E-20 617 - 751 superfamily 238034
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 88.834 5.44E-20 617 - 751 superfamily 238034
FANCM_ID insert domain of FANCM helicase and similar proteins; FANCM and related proteins, like Mph1 and... cl17041 71.1665 4.89E-14 490 - 600 specific 213060
helicase_insert_domain superfamily helical domain inserted in SF2-type helicase domain in Hef-, MDA5- and FancM-like proteins; This... - 71.1665 4.89E-14 490 - 600 superfamily 213148
PHD PHD-finger; PHD folds into an interleaved type of Zn-finger chelating 2 Zn ions in a similar manner... cl17445 50.9564 1.10E-07 1254 - 1309 specific 250011
PHD superfamily PHD-finger; PHD folds into an interleaved type of Zn-finger chelating 2 Zn ions in a similar manner... - 50.9564 1.10E-07 1254 - 1309 superfamily 266687
Spt5_N superfamily Spt5 transcription elongation factor, acidic N-terminal; This is the very acidic N-terminal region... - 40.1091 0.000635793 1398 - 1491 superfamily 256747
Spt5_N superfamily Spt5 transcription elongation factor, acidic N-terminal; This is the very acidic N-terminal region... - 40.1091 0.000635793 1398 - 1491 superfamily 256747

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
264869 Not available 194783 165701 211457 Cre03.g208833.t1.1 AT1G35530.2 312887

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

Add comment

Log in to post comments