PHATRDRAFT_5235 camp-dependent protein kinase regulatory subunit (CAP_ED)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_5235 chr_14 camp-dependent protein kinase regulatory subunit (CAP_ED) 332081 332869 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0390

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0162
 0.30

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor... cl00047 88.9221 2.92E-22 27 - 135 specific 237999
CAP_ED superfamily effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor... - 88.9221 2.92E-22 27 - 135 superfamily 260155
CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor... cl00047 88.9221 2.92E-22 27 - 135 specific 237999
CAP_ED superfamily effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor... - 88.9221 2.92E-22 27 - 135 superfamily 260155
Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein... - 66.3935 1.51E-13 24 - 150 multi-dom 223736
Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein... - 66.3935 1.51E-13 24 - 150 multi-dom 223736

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 214376 150912 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

Add comment

Log in to post comments