PHATRDRAFT_54772 cop9 complex homolog subunit 1 b cg3889-pa (RPN7 superfamily)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_54772 chr_14 cop9 complex homolog subunit 1 b cg3889-pa (RPN7 superfamily) 364625 366199 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0224

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0135
 0.29

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RPN7 superfamily 26S proteasome subunit RPN7; RPN7 (known as the non ATPase regulatory subunit 6 in higher... - 72.989 4.52E-15 117 - 291 superfamily 256084
PCI PCI domain; This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15). cl02111 51.4632 3.12E-08 328 - 419 specific 250589
PCI superfamily PCI domain; This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15). - 51.4632 3.12E-08 328 - 419 superfamily 261183

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
5185 Not available 266455 323717 Not available Cre05.g234300.t1.2 AT3G61140.1 346736

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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