PHATRDRAFT_21996 nonsense-mediated mrna decay protein (NMD3)
Phaeodactylum tricornutum

   

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_21996	chr_15	nonsense-mediated mrna decay protein (NMD3)	375373	376677	+

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0362

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0056	0.30	3100 58000

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
NMD3 superfamily		NMD3 family; The NMD3 protein is involved in nonsense mediated mRNA decay. This amino terminal...	-	167.87	6.29E-49	14 - 256	superfamily	252919
NMD3 superfamily		NMD3 family; The NMD3 protein is involved in nonsense mediated mRNA decay. This amino terminal...	-	167.87	6.29E-49	14 - 256	superfamily	252919
NMD3		NMD protein affecting ribosome stability and mRNA decay [Translation, ribosomal structure and...	-	133.668	2.57E-35	12 - 388	multi-dom	224416

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	211027	68694	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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