PHATRDRAFT_47999 ac007980_9cytosolic trna-ala synthetase (PLN02900)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_47999 chr_15 ac007980_9cytosolic trna-ala synthetase (PLN02900) 658592 661798 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0142

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0256
 0.28

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
AlaRS_core Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain. AlaRS is a homodimer. It is... cl00268 377.086 1.62E-123 19 - 262 specific 238360
class_II_aaRS-like_core superfamily Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA... - 377.086 1.62E-123 19 - 262 superfamily 260313
tRNA_SAD Threonyl and Alanyl tRNA synthetase second additional domain; The catalytically active form of... cl08469 60.859 1.55E-11 740 - 775 specific 197931
tRNA_SAD superfamily Threonyl and Alanyl tRNA synthetase second additional domain; The catalytically active from of... - 52.0074 1.57E-07 540 - 756 superfamily 263673
tRNA_SAD superfamily Threonyl and Alanyl tRNA synthetase second additional domain; The catalytically active from of... - 52.0074 1.57E-07 540 - 756 superfamily 263673
DHHA1 superfamily DHHA1 domain; This domain is often found adjacent to the DHH domain pfam01368 and is called DHHA1... - 39.2237 0.000598974 889 - 954 superfamily 251196
DHHA1 superfamily DHHA1 domain; This domain is often found adjacent to the DHH domain pfam01368 and is called DHHA1... - 39.2237 0.000598974 889 - 954 superfamily 251196
PLN02900 alanyl-tRNA synthetase - 1472.17 0 5 - 955 multi-dom 215487

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
40774 Not available Not available 323278 462569 Cre02.g143200.t1.1 Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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