PHATRDRAFT_48173 rok family protein (COG2123)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_48173 chr_16 rok family protein (COG2123) 411793 414404 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0185

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0052
 0.42

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RNase_PH superfamily RNase PH-like 3'-5' exoribonucleases; RNase PH-like 3'-5'... - 129.599 2.46E-33 37 - 294 superfamily 261591
NBD_sugar-kinase_HSP70_actin superfamily Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily; This superfamily includes... - 51.1383 1.22E-07 367 - 600 superfamily 266502
COG2123 RNase PH-related exoribonuclease [Translation, ribosomal structure and biogenesis] - 134.413 6.39E-35 33 - 294 multi-dom 225034
NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism] - 67.5144 2.16E-12 371 - 717 multi-dom 224851

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
263374 Not available 152145 286637 Not available Not available Not available 520447

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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