PHATRDRAFT_48177 (DECH_helic)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_48177 chr_16 (DECH_helic) 421923 425888 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0396

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 70.7296 6.92E-14 646 - 759 superfamily 238034
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 70.7296 6.92E-14 646 - 759 superfamily 238034
DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... cl17251 66.592 1.57E-12 351 - 483 specific 238005
DEXDc superfamily DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... - 66.592 1.57E-12 351 - 483 superfamily 266587
DUF1998 superfamily Domain of unknown function (DUF1998); This family of proteins are functionally uncharacterized.... - 56.0484 2.31E-09 1134 - 1221 superfamily 255321
DUF1998 superfamily Domain of unknown function (DUF1998); This family of proteins are functionally uncharacterized.... - 56.0484 2.31E-09 1134 - 1221 superfamily 255321
DECH_helic helicase/secretion neighborhood putative DEAH-box helicase; A conserved gene neighborhood widely... - 351.726 4.72E-105 323 - 1239 multi-dom 234365

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
3719 Not available 180755 240323 462891 Cre03.g187700.t1.1 AT5G08110.1 471348

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

Add comment

Log in to post comments