PHATRDRAFT_22411 short-chain dehydrogenase reductase sdr (SDR_c)
Phaeodactylum tricornutum

   

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_22411	chr_17	short-chain dehydrogenase reductase sdr (SDR_c)	339706	340671	+

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0288

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0037	0.32	1.4e-18 4300

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
SDR_c		classical (c) SDRs; SDRs are a functionally diverse family of oxidoreductases that have a single...	cl09931	198.662	8.45E-62	48 - 304	specific	212491
NADB_Rossmann superfamily		Rossmann-fold NAD(P)(+)-binding proteins; A large family of proteins that share a Rossmann-fold NAD...	-	198.662	8.45E-62	48 - 304	superfamily	263925
FabG		Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [...	-	174.621	2.89E-52	40 - 300	multi-dom	223959

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	177754	193234	233028	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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