PHATRDRAFT_48602 phospholipase carboxylesterase familyexpressed (PRK00142)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_48602 chr_18 phospholipase carboxylesterase familyexpressed (PRK00142) 336218 337966 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0205

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0075
 0.22

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RRM_SF RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... cl17169 42.6773 2.25E-05 494 - 563 specific 240668
RRM_SF superfamily RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... - 42.6773 2.25E-05 494 - 563 superfamily 266524
RHOD superfamily Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese... - 126.155 1.20E-34 231 - 354 superfamily 260205
PRK00142 putative rhodanese-related sulfurtransferase; Provisional - 217.793 2.62E-65 113 - 467 multi-dom 234663
COG0724 RNA-binding proteins (RRM domain) [General function prediction only] - 42.6266 0.000170049 448 - 570 multi-dom 223796

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
8541 Not available 260018 217626 194568 Cre17.g719522.t1.2 Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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