PHATRDRAFT_48666 (AFD_class_I superfamily)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_48666 chr_18 (AFD_class_I superfamily) 522080 527011 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0453

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0005
 0.48

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
AFD_class_I superfamily Adenylate forming domain, Class I; This family includes acyl- and aryl-CoA ligases, as well as the... - 40.6099 0.00292125 636 - 706 superfamily 266508
AFD_class_I superfamily Adenylate forming domain, Class I; This family includes acyl- and aryl-CoA ligases, as well as the... - 40.6099 0.00292125 636 - 706 superfamily 266508
LbetaH superfamily Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each... - 38.3555 0.00207878 1532 - 1614 superfamily 260227
PP-binding Phosphopantetheine attachment site; A 4'-phosphopantetheine prosthetic group is attached... cl09936 48.3347 1.03E-06 745 - 808 specific 249951
PP-binding superfamily Phosphopantetheine attachment site; A 4'-phosphopantetheine prosthetic group is attached... - 48.3347 1.03E-06 745 - 808 superfamily 263928
LbetaH superfamily Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each... - 38.3555 0.00207878 1532 - 1614 superfamily 260227
AFD_class_I superfamily Adenylate forming domain, Class I; This family includes acyl- and aryl-CoA ligases, as well as the... - 40.6099 0.00292125 636 - 706 superfamily 266508
CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites... - 285.895 2.17E-83 78 - 601 multi-dom 223395
NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function; This domain is found... - 205.37 6.58E-55 901 - 1611 multi-dom 233832

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available AT3G48990.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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