PHATRDRAFT_22629 (ABC_ATPase superfamily)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_22629 chr_18 (ABC_ATPase superfamily) 540363 544682 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0050

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0021
 0.40

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ABC_ATPase superfamily ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... - 184.003 3.12E-52 187 - 416 superfamily 266551
ABC_ATPase superfamily ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... - 184.003 3.12E-52 187 - 416 superfamily 266551
ABC2_membrane ABC-2 type transporter; ABC-2 type transporter. cl17235 110.81 7.80E-27 1153 - 1365 specific 250332
ABC2_membrane superfamily ABC-2 type transporter; ABC-2 type transporter. - 110.81 7.80E-27 1153 - 1365 superfamily 266576
ABC2_membrane ABC-2 type transporter; ABC-2 type transporter. cl17235 110.81 7.80E-27 1153 - 1365 specific 250332
ABC2_membrane superfamily ABC-2 type transporter; ABC-2 type transporter. - 110.81 7.80E-27 1153 - 1365 superfamily 266576
3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]. - 214.14 1.60E-58 150 - 800 multi-dom 233207
CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] - 163.247 5.69E-44 846 - 1134 multi-dom 224054
COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms] - 44.1524 0.000136744 1156 - 1345 multi-dom 223912

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available 564678

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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