PHATRDRAFT_48723 membrane-associated zn-dependent proteases 1 (TIGR00054)
Phaeodactylum tricornutum

   

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_48723	chr_19	membrane-associated zn-dependent proteases 1 (TIGR00054)	56715	58420	+

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0075

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0239	0.32	68 7100

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
S2P-M50 superfamily		Site-2 protease (S2P) class of zinc metalloproteases (MEROPS family M50) cleaves transmembrane...	-	78.6095	6.49E-17	465 - 521	superfamily	245232
S2P-M50 superfamily		Site-2 protease (S2P) class of zinc metalloproteases (MEROPS family M50) cleaves transmembrane...	-	78.6095	6.49E-17	465 - 521	superfamily	245232
PDZ superfamily		PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif)....	-	43.0062	1.68E-05	295 - 371	superfamily	260201
TIGR00054		RIP metalloprotease RseP; Members of this nearly universal bacterial protein family are regulated...	-	158.06	9.55E-43	90 - 516	multi-dom	232801

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
261878		Not available	158755	196865	452737	Cre03.g144164.t1.1	AT2G32480.1	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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