PHATRDRAFT_48800 (PAS)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_48800 chr_19 (PAS) 270060 271872 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0328

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0018
 0.38

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PAS superfamily PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising... - 52.6355 1.20E-08 311 - 418 superfamily 238075
PAS superfamily PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising... - 52.6355 1.20E-08 311 - 418 superfamily 238075
B_zip1 basic leucine zipper DNA-binding and multimerization region of GCN4 and related proteins; Basic... cl02576 39.9807 0.000141975 268 - 311 specific 213400
B_zip1 superfamily basic leucine zipper DNA-binding and multimerization region of GCN4 and related proteins; Basic... - 39.9807 0.000141975 268 - 311 superfamily 261357
PAS_9 PAS domain; PAS domain. - 45.4519 3.38E-06 312 - 418 multi-dom 257751

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
9689 Not available 263436 322677 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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