PHATRDRAFT_25308 af063804_1triosephosphate isomerase glyceraldehyde-3-phosphate dehydrogenase precursor (GapA)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_25308 chr_2 af063804_1triosephosphate isomerase glyceraldehyde-3-phosphate dehydrogenase precursor (GapA) 712237 714307 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0173

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0195
 0.22

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of... cl17186 335.66 4.58E-111 31 - 271 specific 238190
TIM_phosphate_binding superfamily TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an... - 335.66 4.58E-111 31 - 271 superfamily 266538
Gp_dh_C Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; GAPDH is a tetrameric NAD-binding... cl19935 275.971 3.16E-89 436 - 593 specific 251539
Gp_dh_C superfamily Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; GAPDH is a tetrameric NAD-binding... - 275.971 3.16E-89 436 - 593 superfamily 268288
Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; GAPDH is a tetrameric NAD-binding... cl17742 234.323 1.50E-73 282 - 431 specific 249536
Gp_dh_N superfamily Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; GAPDH is a tetrameric NAD-binding... - 234.323 1.50E-73 282 - 431 superfamily 266804
GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate... - 492.071 9.97E-171 281 - 612 multi-dom 223135

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
28241 Not available Not available Not available Not available Not available AT1G79530.1 285408

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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