PHATRDRAFT_25331 at4g39280 t22f8_180 (PLN02853)
Phaeodactylum tricornutum

   

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_25331	chr_2	at4g39280 t22f8_180 (PLN02853)	786199	787836	+

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0130

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0249	0.32	29000 800000

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
PheRS_alpha_core		Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain. PheRS belongs to class II...	cl00268	319.491	1.41E-106	228 - 486	specific	238277
class_II_aaRS-like_core superfamily		Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA...	-	319.491	1.41E-106	228 - 486	superfamily	260313
PLN02853		Probable phenylalanyl-tRNA synthetase alpha chain	-	927.927	0	2 - 500	multi-dom	215458

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
25960		Not available	275672	62507	445319	Cre09.g389430.t1.1	AT4G39280.1	348851

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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