PHATRDRAFT_10122 rna binding motif protein 22 (RRM_SF superfamily)Phaeodactylum tricornutum | Diatom Portal

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_10122	chr_2	rna binding motif protein 22 (RRM_SF superfamily)	1046252	1047223	-

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0408

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0251	0.21	10000 89000

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
RRM_SF superfamily		RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (...	-	72.2924	2.08E-16	239 - 313	superfamily	266524
ZnF_C3H1		zinc finger; zinc finger.	cl11592	39.5349	7.65E-05	159 - 183	specific	214632
zf-CCCH superfamily		Zinc finger C-x8-C-x5-C-x3-H type (and similar); Zinc finger C-x8-C-x5-C-x3-H type (and similar).	-	39.5349	7.65E-05	159 - 183	superfamily	264437
COG0724		RNA-binding proteins (RRM domain) [General function prediction only]	-	55.7234	3.93E-09	237 - 318	multi-dom	223796

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
34293		Not available	160233	158646	462082	Cre02.g075650.t1.2	AT1G07360.1	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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