PHATRDRAFT_9855 rna polymerase sigma-70 factor (Sig70-cyanoRpoD)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_9855 chr_2 rna polymerase sigma-70 factor (Sig70-cyanoRpoD) 1123083 1124159 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0404

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0231
 0.29

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Sigma70_r2 superfamily Sigma-70 region 2; Region 2 of sigma-70 is the most conserved region of the entire protein. All... - 62.2085 1.58E-12 104 - 170 superfamily 252661
Sigma70_r2 superfamily Sigma-70 region 2; Region 2 of sigma-70 is the most conserved region of the entire protein. All... - 62.2085 1.58E-12 104 - 170 superfamily 252661
Sigma70_r3 superfamily Sigma-70 region 3; Region 3 forms a discrete compact three helical domain within the sigma-factor.... - 34.8832 0.00469641 187 - 259 superfamily 146934
Sig70-cyanoRpoD RNA polymerase sigma factor, cyanobacterial RpoD-like family; This family includes a number of... - 186.298 7.96E-56 25 - 344 multi-dom 234082

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
40966 Not available 276710 236311 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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