PHATRDRAFT_54139 snf21_schpo snf2 family atp-dependent chromatin-remodeling factor snf21 (atp-dependent helicase snf21) (SNF2_N)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_54139 chr_2 snf21_schpo snf2 family atp-dependent chromatin-remodeling factor snf21 (atp-dependent helicase... 1316659 1319771 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0489

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 115.028 2.42E-29 558 - 686 superfamily 238034
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 115.028 2.42E-29 558 - 686 superfamily 238034
DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... cl17251 104.342 1.43E-25 264 - 404 specific 238005
DEXDc superfamily DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... - 104.342 1.43E-25 264 - 404 superfamily 266587
Bromodomain superfamily Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone... - 103.188 1.56E-25 897 - 994 superfamily 261339
SnAC superfamily Snf2-ATP coupling, chromatin remodelling complex; This domain appears to play a crucial role in... - 64.996 9.95E-13 777 - 843 superfamily 258757
SnAC superfamily Snf2-ATP coupling, chromatin remodelling complex; This domain appears to play a crucial role in... - 64.996 9.95E-13 777 - 843 superfamily 258757
SNF2_N SNF2 family N-terminal domain; This domain is found in proteins involved in a variety of processes... - 354.671 6.20E-114 247 - 548 multi-dom 249654

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
5001 Not available 254001 323122 Not available Not available AT3G06010.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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