PHATRDRAFT_30003 proteasomebeta type 3 (proteasome_beta_type_3)Phaeodactylum tricornutum | Diatom Portal

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_30003	chr_20	proteasomebeta type 3 (proteasome_beta_type_3)	111236	111850	-

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0183

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0125	0.29	3.9 3700

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
proteasome_beta_type_3		proteasome beta type-3 subunit. The 20S proteasome, multisubunit proteolytic complex, is the...	cl00467	341.145	7.27E-120	6 - 200	specific	239728
Ntn_hydrolase superfamily		The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are...	-	341.145	7.27E-120	6 - 200	superfamily	260443
PRE1		20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover,...	-	130.881	3.20E-37	5 - 197	multi-dom	223711

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
38335		Not available	273592	185537	459379	Cre06.g267500.t1.2	AT1G21720.1	288866

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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