PHATRDRAFT_49168 nickel-binding periplasmic protein precursor (PBP2_NikA_DppA_OppA_like superfamily)
Phaeodactylum tricornutum

   

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_49168	chr_21	nickel-binding periplasmic protein precursor (PBP2_NikA_DppA_OppA_like superfamily)	116811	118604	+

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0418

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0027	0.44	23000 100000

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
PBP2_NikA_DppA_OppA_like superfamily		The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the...	-	119.639	3.62E-29	3 - 166	superfamily	261038
PBP2_NikA_DppA_OppA_like superfamily		The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the...	-	119.639	3.62E-29	3 - 166	superfamily	261038
DdpA		ABC-type dipeptide transport system, periplasmic component [Amino acid transport and metabolism]	-	160.882	8.91E-43	167 - 536	multi-dom	223818

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
bd938		Not available	Not available	294211	198033	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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