PHATRDRAFT_39880 high mobility group protein 4 (hmg-4) (high mobility group protein 2a) (hmg-2a) (HMGB-UBF_HMG-box)
Phaeodactylum tricornutum

   

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_39880	chr_21	high mobility group protein 4 (hmg-4) (high mobility group protein 2a) (hmg-2a) (HMGB-UBF_HMG-box)	263975	264838	+

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0184

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0092	0.51	1500 4400

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
HMGB-UBF_HMG-box		HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins....	cl00082	60.7193	2.24E-12	39 - 116	specific	238686
HMG-box superfamily		High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and...	-	60.7193	2.24E-12	39 - 116	superfamily	260179

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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