PHATRDRAFT_15960 probable 23s rna-specific pseudouridine synthase d (rluA_subfam)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_15960 chr_22 probable 23s rna-specific pseudouridine synthase d (rluA_subfam) 275898 277013 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0260

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0130
 0.35

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PseudoU_synth_RluCD_like Pseudouridine synthase, RsuA/RluD family; This group is comprised of eukaryotic, bacterial and... cl00130 207.575 7.83E-66 82 - 278 specific 211346
PseudoU_synth superfamily Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to... - 207.575 7.83E-66 82 - 278 superfamily 260207
S4 S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged... cl09940 41.8514 1.58E-05 1 - 86 specific 238095
S4 superfamily S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged... - 41.8514 1.58E-05 1 - 86 superfamily 263930
rluA_subfam pseudouridine synthase, RluA family; In E. coli, RluD (SfhB) modifies uridine to pseudouridine at... - 283.06 1.27E-93 1 - 300 multi-dom 161659

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 215175 198448 69322 Cre02.g078750.t1.1 AT1G76050.2 495472

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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